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Gene orthology and N-response between maize and Arabidopsis orthologs To infer the orthology between maize and Arabidopsis, we ran OrthoFinder2 (Emms and Kelly 2015) with the following command “orthofinder -a 8 -t 16 -M msa -A mafft.” Protein sequences of the longest transcripts were downloaded from Phytozome 12 (Goodstein et al
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